PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P08020_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 179aa    MW: 19138.4 Da    PI: 8.4368
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P08020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD148.51.4e-15731125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+gCrt+L YPrGA++VRCa+C+t+
  GSMUA_Achr7P08020_001  7 CNGCRTILLYPRGATNVRCAICNTM 31
                           ***********************96 PP

2zf-LSD140.45e-135276125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C gCrtlL+Y+ GA++VRC++C t+
  GSMUA_Achr7P08020_001 52 CYGCRTLLMYTSGATNVRCSCCGTI 76
                           99********************997 PP

3zf-LSD141.52.2e-1390114125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            Cg+C+t+L YP GApsV+Ca+C++V
  GSMUA_Achr7P08020_001  90 CGQCHTTLIYPCGAPSVKCAICHFV 114
                            ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.6E-15432IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.106.9E-45113No hitNo description
PfamPF069432.1E-13730IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.15E-520112IPR011031Multihaem cytochrome
TIGRFAMsTIGR010533.2E-154978IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-115276IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.0E-988115IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-1290114IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MQSQLVCNGC RTILLYPRGA TNVRCAICNT MTPTLPAGID MAQQMEMAQI ICYGCRTLLM  60
YTSGATNVRC SCCGTINMAR PANQNAYLNC GQCHTTLIYP CGAPSVKCAI CHFVTNAGTM  120
RVPIPEAQRP NETIPMRPST SAPPSEAQNM TVVVENPMSV NQSGKLVSNV VVGVTTGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407702.11e-128PREDICTED: protein LOL2-like
SwissprotQ2QMB33e-69LOL2_ORYSJ; Protein LOL2
TrEMBLM0TFP21e-128M0TFP2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P08020_0011e-127(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-59LSD family protein